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sample_name:"Photosystem I P700 chlorophyll a apoprotein A1"
Cryo-EM structure of the Photosystem I - LHCI supercomplex from Coelastrella sp.
Release date: March 6, 2024
Resolution: 2.81 Å
EM Method: Single-particle
Fitted PDBs: 8cmo
Q-score: 0.537
Resolution: 2.81 Å
EM Method: Single-particle
Fitted PDBs: 8cmo
Q-score: 0.537
Fadeeva M, Klaiman D, Nelson N
To Be Published
Sample:
- Photosystem i reaction center subunit iv psae (6 kDa, Protein from Coelastrella)
- Photosystem i subunit ix psaj (4 kDa, Protein from Coelastrella)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Photosystem i reaction center subunit v psag (9 kDa, Protein from Coelastrella)
- (2r)-2-hydroxy-3-(phosphonooxy)propyl (9e)-octadec-9-enoate (436 Da, Ligand)
- Lauric acid (200 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Octanoic acid (caprylic acid) (144 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- (1~{s})-3,5,5-trimethyl-4-[(1~{e},3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e},17~{e})-3,7,12,16-tetramethyl-18-[(4~{s})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-3-en-1-ol (568 Da, Ligand)
- Photosystem i reaction center subunit x psak (8 kDa, Protein from Coelastrella)
- Light-harvesting protein of photosystem i lhca3 (23 kDa, Protein from Coelastrella)
- Light-harvesting protein of photosystem i lhca4 (22 kDa, Protein from Coelastrella)
- Light-harvesting protein of photosystem i lhca6 (24 kDa, Protein from Coelastrella)
- Phylloquinone (450 Da, Ligand)
- Photosystem i reaction center subunit ii psad (16 kDa, Protein from Coelastrella)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Light-harvesting protein of photosystem i lhca8 (22 kDa, Protein from Coelastrella)
- Chlorophyll b (907 Da, Ligand)
- Light-harvesting protein of photosystem i lhca5 (24 kDa, Protein from Coelastrella)
- Coelastrella sp. photosystem i (900 kDa, Complex from Coelastrella)
- Sphingosine (299 Da, Ligand)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Calcium ion (40 Da, Ligand)
- Photosystem i reaction center subunit iii psaf (17 kDa, Protein from Coelastrella)
- Photosystem i reaction center subunit viii psai (4 kDa, Protein from Coelastrella)
- Photosystem i subunit vii psac (8 kDa, Protein from Coelastrella)
- 1,2-diacyl-glycerol-3-sn-phosphate (704 Da, Ligand)
- (2s)-3-{[(r)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-hydroxypropyl hexadecanoate (453 Da, Ligand)
- Light-harvesting protein of photosystem i lhca1 (20 kDa, Protein from Coelastrella)
- Water (18 Da, Ligand)
- Light-harvesting protein of photosystem i lhca2 partial (7 kDa, Protein from Coelastrella)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Light-harvesting protein of photosystem i lhca9 (20 kDa, Protein from Coelastrella)
- Diacyl glycerol (625 Da, Ligand)
- Photosystem i reaction centre subunit xi psal (12 kDa, Protein from Coelastrella)
- (3r)-beta,beta-caroten-3-ol (552 Da, Ligand)
- Iron/sulfur cluster (351 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a1 psaa (82 kDa, Protein from Coelastrella)
- Photosystem i p700 chlorophyll a apoprotein a2 psab (81 kDa, Protein from Coelastrella)
- Phosphatidylinositol (887 Da, Ligand)
- Light-harvesting protein of photosystem i lhca7 (24 kDa, Protein from Coelastrella)
- Chlorophyll a isomer (893 Da, Ligand)
- Beta-carotene (536 Da, Ligand)
PSI-LHCI of the red alga Cyanidium caldarium RK-1 (NIES-2137)
Release date: Feb. 14, 2024
Resolution: 1.92 Å
EM Method: Single-particle
Fitted PDBs: 8wey
Q-score: 0.662
Resolution: 1.92 Å
EM Method: Single-particle
Fitted PDBs: 8wey
Q-score: 0.662
Kato K, Hamaguchi T, Kumazawa M, Nakajima Y, Ifuku K, Hirooka S, Hirose Y, Miyagishima SY, Suzuki T, Kawakami K, Dohmae N, Yonekura K, Shen JR, Nagao R
PNAS (2024) 121 pp. e2319658121-e2319658121 [ Pubmed: 38442179 DOI: doi:10.1073/pnas.2319658121 ]
Sample:
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Photosystem i reaction center subunit x (7 kDa, Protein from Cyanidium caldarium)
- Photosystem i reaction center subunit xi (15 kDa, Protein from Cyanidium caldarium)
- Photosystem i iron-sulfur center (8 kDa, Protein from Cyanidium caldarium)
- Photosystem i reaction center subunit iv (6 kDa, Protein from Cyanidium caldarium)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- Photosystem i reaction center subunit iii (20 kDa, Protein from Cyanidium caldarium)
- Lhcr2 (24 kDa, Protein from Cyanidium caldarium)
- Phylloquinone (450 Da, Ligand)
- Lhcr3 (23 kDa, Protein from Cyanidium caldarium)
- Photosystem i reaction center subunit ii (15 kDa, Protein from Cyanidium caldarium)
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Cyanidium caldarium)
- Photosystem i p700 chlorophyll a apoprotein a1 (82 kDa, Protein from Cyanidium caldarium)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Cyanidium caldarium)
- Photosystem i subunit o (16 kDa, Protein from Cyanidium caldarium)
- Psi-lhci (550 kDa, Complex from Cyanidium caldarium)
- Water (18 Da, Ligand)
- (1~{r})-3,5,5-trimethyl-4-[(1~{e},3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e},17~{e})-3,7,12,16-tetramethyl-18-[(4~{r} )-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-3-en-1-ol (568 Da, Ligand)
- Photosystem i reaction center subunit viii (3 kDa, Protein from Cyanidium caldarium)
- Lhcr1 (24 kDa, Protein from Cyanidium caldarium)
- Iron/sulfur cluster (351 Da, Ligand)
- Photosystem i reaction center subunit xii (3 kDa, Protein from Cyanidium caldarium)
- Unknown ligand (Ligand)
- Chlorophyll a isomer (893 Da, Ligand)
- Beta-carotene (536 Da, Ligand)
Cryo-EM structure of the Arabidopsis thaliana photosystem I(PSI-LHCII-ST2)
Release date: Nov. 15, 2023
Resolution: 2.79 Å
EM Method: Single-particle
Fitted PDBs: 8j6z
Q-score: 0.587
Resolution: 2.79 Å
EM Method: Single-particle
Fitted PDBs: 8j6z
Q-score: 0.587
To Be Published
Sample:
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Chlorophyll a-b binding protein 2, chloroplastic (28 kDa, Protein from Arabidopsis thaliana)
- Chlorophyll a-b binding protein 2.1, chloroplastic (28 kDa, Protein from Arabidopsis thaliana)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Photosystem i reaction center subunit xi, chloroplastic (23 kDa, Protein from Arabidopsis thaliana)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
- Photosystem i reaction center subunit vi-2, chloroplastic (15 kDa, Protein from Arabidopsis thaliana)
- Chlorophyll a-b binding protein 4, chloroplastic (27 kDa, Protein from Arabidopsis thaliana)
- Photosystem i reaction center subunit ii-2, chloroplastic (22 kDa, Protein from Arabidopsis thaliana)
- Photosystem i (Complex from Arabidopsis thaliana)
- Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from Arabidopsis thaliana)
- Phylloquinone (450 Da, Ligand)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Photosystem i chlorophyll a/b-binding protein 3-1, chloroplastic (29 kDa, Protein from Arabidopsis thaliana)
- Photosystem i iron-sulfur center (9 kDa, Protein from Arabidopsis thaliana)
- Chlorophyll b (907 Da, Ligand)
- Photosystem i reaction center subunit viii (4 kDa, Protein from Arabidopsis thaliana)
- Photosystem i reaction center subunit v, chloroplastic (17 kDa, Protein from Arabidopsis thaliana)
- Chlorophyll a-b binding protein 6, chloroplastic (26 kDa, Protein from Arabidopsis thaliana)
- Photosystem i chlorophyll a/b-binding protein 2, chloroplastic (27 kDa, Protein from Arabidopsis thaliana)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Photosystem i reaction center subunit iii, chloroplastic (24 kDa, Protein from Arabidopsis thaliana)
- Photosystem i reaction center subunit ix (5 kDa, Protein from Arabidopsis thaliana)
- Iron/sulfur cluster (351 Da, Ligand)
- Photosystem i reaction center subunit psak, chloroplastic (13 kDa, Protein from Arabidopsis thaliana)
- Photosystem i subunit o (15 kDa, Protein from Arabidopsis thaliana)
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Arabidopsis thaliana)
- Photosystem i reaction center subunit iv a, chloroplastic (14 kDa, Protein from Arabidopsis thaliana)
- (1r,3r)-6-{(3e,5e,7e,9e,11e,13e,15e,17e)-18-[(1s,4r,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]hept-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaenylidene}-1,5,5-trimethylcyclohexane-1,3-diol (600 Da, Ligand)
- Chlorophyll a isomer (893 Da, Ligand)
- Beta-carotene (536 Da, Ligand)
Coordinates of Cryo-EM structure of the Arabidopsis thaliana PSI in state 1 (PSI-ST1)
Release date: Nov. 15, 2023
Resolution: 3.06 Å
EM Method: Single-particle
Fitted PDBs: 8j7a
Q-score: 0.549
Resolution: 3.06 Å
EM Method: Single-particle
Fitted PDBs: 8j7a
Q-score: 0.549
To Be Published
Sample:
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Photosystem i reaction center subunit xi, chloroplastic (23 kDa, Protein from Arabidopsis thaliana)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
- Photosystem i reaction center subunit vi-2, chloroplastic (15 kDa, Protein from Arabidopsis thaliana)
- Chlorophyll a-b binding protein 4, chloroplastic (27 kDa, Protein from Arabidopsis thaliana)
- Photosystem i reaction center subunit ii-2, chloroplastic (22 kDa, Protein from Arabidopsis thaliana)
- Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from Arabidopsis thaliana)
- Phylloquinone (450 Da, Ligand)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Photosystem i chlorophyll a/b-binding protein 3-1, chloroplastic (29 kDa, Protein from Arabidopsis thaliana)
- Photosystem i iron-sulfur center (9 kDa, Protein from Arabidopsis thaliana)
- Chlorophyll b (907 Da, Ligand)
- Photosystem i reaction center subunit viii (4 kDa, Protein from Arabidopsis thaliana)
- Photosystem i reaction center subunit v, chloroplastic (17 kDa, Protein from Arabidopsis thaliana)
- Chlorophyll a-b binding protein 6, chloroplastic (26 kDa, Protein from Arabidopsis thaliana)
- Photosystem i chlorophyll a/b-binding protein 2, chloroplastic (27 kDa, Protein from Arabidopsis thaliana)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Photosystem i reaction center subunit iii, chloroplastic (24 kDa, Protein from Arabidopsis thaliana)
- Photosystem i reaction center subunit ix (5 kDa, Protein from Arabidopsis thaliana)
- Iron/sulfur cluster (351 Da, Ligand)
- Cryo-em structure of the arabidopsis thaliana photosystem i(psi-lhcii-st2) (Complex from Arabidopsis thaliana)
- Photosystem i reaction center subunit psak, chloroplastic (13 kDa, Protein from Arabidopsis thaliana)
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Arabidopsis thaliana)
- Photosystem i reaction center subunit iv a, chloroplastic (14 kDa, Protein from Arabidopsis thaliana)
- Chlorophyll a isomer (893 Da, Ligand)
- Beta-carotene (536 Da, Ligand)
Coordinates of Cryo-EM structure of the Arabidopsis thaliana PSI in state 2 (PSI-ST2)
Release date: Nov. 15, 2023
Resolution: 3.22 Å
EM Method: Single-particle
Fitted PDBs: 8j7b
Q-score: 0.576
Resolution: 3.22 Å
EM Method: Single-particle
Fitted PDBs: 8j7b
Q-score: 0.576
Chen SJB, Wu JH, Sui SF, Zhang LX
To Be Published
Sample:
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Photosystem i reaction center subunit xi, chloroplastic (23 kDa, Protein from Arabidopsis thaliana)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
- Photosystem i reaction center subunit vi-2, chloroplastic (15 kDa, Protein from Arabidopsis thaliana)
- Chlorophyll a-b binding protein 4, chloroplastic (27 kDa, Protein from Arabidopsis thaliana)
- Photosystem i reaction center subunit ii-2, chloroplastic (22 kDa, Protein from Arabidopsis thaliana)
- Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from Arabidopsis thaliana)
- Phylloquinone (450 Da, Ligand)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Photosystem i chlorophyll a/b-binding protein 3-1, chloroplastic (29 kDa, Protein from Arabidopsis thaliana)
- Photosystem i iron-sulfur center (9 kDa, Protein from Arabidopsis thaliana)
- Chlorophyll b (907 Da, Ligand)
- Photosystem i reaction center subunit viii (4 kDa, Protein from Arabidopsis thaliana)
- Photosystem i reaction center subunit v, chloroplastic (17 kDa, Protein from Arabidopsis thaliana)
- Chlorophyll a-b binding protein 6, chloroplastic (26 kDa, Protein from Arabidopsis thaliana)
- Photosystem i chlorophyll a/b-binding protein 2, chloroplastic (27 kDa, Protein from Arabidopsis thaliana)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Photosystem i reaction center subunit iii, chloroplastic (24 kDa, Protein from Arabidopsis thaliana)
- Photosystem i reaction center subunit ix (5 kDa, Protein from Arabidopsis thaliana)
- Iron/sulfur cluster (351 Da, Ligand)
- Cryo-em structure of the arabidopsis thaliana photosystem i(psi-lhcii-st2) (Complex from Arabidopsis thaliana)
- Photosystem i reaction center subunit psak, chloroplastic (13 kDa, Protein from Arabidopsis thaliana)
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Arabidopsis thaliana)
- Photosystem i reaction center subunit iv a, chloroplastic (14 kDa, Protein from Arabidopsis thaliana)
- Chlorophyll a isomer (893 Da, Ligand)
- Beta-carotene (536 Da, Ligand)
Photosystem I assembly intermediate of Avena sativa
Release date: Nov. 1, 2023
Resolution: 2.2 Å
EM Method: Single-particle
Fitted PDBs: 8bcv
Q-score: 0.645
Resolution: 2.2 Å
EM Method: Single-particle
Fitted PDBs: 8bcv
Q-score: 0.645
Naschberger A, Amunts A, Nelson N
To Be Published
Sample:
- Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from Avena sativa)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Assembly intermediate of psi from avena sativa (Complex from Avena sativa)
- Photosystem i reaction center subunit viii (3 kDa, Protein from Avena sativa)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Antheraxanthin (584 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
- (1~{s})-3,5,5-trimethyl-4-[(1~{e},3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e},17~{e})-3,7,12,16-tetramethyl-18-[(4~{s})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-3-en-1-ol (568 Da, Ligand)
- Photosystem i reaction center subunit iv (15 kDa, Protein from Avena sativa)
- Chlorophyll a-b binding protein 4, chloroplastic (27 kDa, Protein from Avena sativa)
- Phylloquinone (450 Da, Ligand)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Photosystem i reaction center subunit v (15 kDa, Protein from Avena sativa)
- Chlorophyll b (907 Da, Ligand)
- Photosystem i reaction center subunit vi (10 kDa, Protein from Avena sativa)
- Photosystem i reaction center subunit xi (22 kDa, Protein from Avena sativa)
- Dodecyl-alpha-d-maltoside (510 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Avena sativa)
- Water (18 Da, Ligand)
- Chlorophyll a-b binding protein 1, chloroplastic (26 kDa, Protein from Avena sativa)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Photosystem i reaction center subunit x (13 kDa, Protein from Avena sativa)
- Iron/sulfur cluster (351 Da, Ligand)
- Photosystem i iron-sulfur center (8 kDa, Protein from Avena sativa)
- Chlorophyll a-b binding protein 2, chloroplastic (22 kDa, Protein from Avena sativa)
- Photosystem i reaction center subunit iii (19 kDa, Protein from Avena sativa)
- Photosystem i reaction center subunit ix (5 kDa, Protein from Avena sativa)
- Chlorophyll a isomer (893 Da, Ligand)
- Photosystem i reaction center subunit ii (22 kDa, Protein from Avena sativa)
- Chlorophyll a-b binding protein 3, chloroplastic (29 kDa, Protein from Avena sativa)
- Beta-carotene (536 Da, Ligand)
Photosystem I assembly intermediate of Avena sativa
Release date: Nov. 1, 2023
Resolution: 2.11 Å
EM Method: Single-particle
Fitted PDBs: 8bcw
Q-score: 0.707
Resolution: 2.11 Å
EM Method: Single-particle
Fitted PDBs: 8bcw
Q-score: 0.707
Naschberger A, Amunts A, Nelson N
To Be Published
Sample:
- Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from Avena sativa)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Assembly intermediate of psi from avena sativa (Complex from Avena sativa)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
- Phylloquinone (450 Da, Ligand)
- Psi subunit v (22 kDa, Protein from Avena sativa)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Photosystem i reaction center subunit ii, chloroplastic (22 kDa, Protein from Avena sativa)
- Photosystem i reaction center subunit iv a, chloroplastic (15 kDa, Protein from Avena sativa)
- Dodecyl-alpha-d-maltoside (510 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Avena sativa)
- Water (18 Da, Ligand)
- Iron/sulfur cluster (351 Da, Ligand)
- Photosystem i iron-sulfur center (8 kDa, Protein from Avena sativa)
- Photosystem i reaction center subunit viii (3 kDa, Protein from Avena sativa)
- Chlorophyll a isomer (893 Da, Ligand)
- Photosystem i reaction center subunit vi, chloroplastic (10 kDa, Protein from Avena sativa)
- Beta-carotene (536 Da, Ligand)
Release date: Aug. 16, 2023
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8am5
Q-score: 0.52
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8am5
Q-score: 0.52
Zhao Z, Vercellino I, Knoppova J, Sobotka R, Murray JW, Nixon PJ, Sazanov LA, Komenda J
Nat Commun (2023) 14 pp. 4681-4681 [ Pubmed: 37542031 DOI: doi:10.1038/s41467-023-40388-6 ]
Sample:
- Photosystem i reaction center subunit viii (4 kDa, Protein from Synechocystis sp. PCC 6803)
- Photosystem ii reaction center protein i (4 kDa, Protein from Synechocystis sp. PCC 6803)
- Rcii/psi complex (Complex from Synechocystis sp. PCC 6803)
- (1r,2s)-4-{(1e,3e,5e,7e,9e,11e,13e,15e,17e)-18-[(4s)-4-hydroxy-2,6,6-trimethylcyclohex-1-en-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaen-1-yl}-2,5,5-trimethylcyclohex-3-en-1-ol (568 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
- Cytochrome b559 subunit alpha (9 kDa, Protein from Synechocystis sp. PCC 6803)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- Photosystem i reaction center subunit xii (3 kDa, Protein from Synechocystis sp. PCC 6803)
- Photosystem i reaction center subunit ii (15 kDa, Protein from Synechocystis sp. PCC 6803)
- Photosystem i reaction center subunit iv (8 kDa, Protein from Synechocystis sp. PCC 6803)
- Photosystem i reaction center subunit psak 1 (8 kDa, Protein from Synechocystis sp. PCC 6803)
- Photosystem ii assembly lipoprotein ycf48 (37 kDa, Protein from Synechocystis sp. PCC 6803)
- Phylloquinone (450 Da, Ligand)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a2 (81 kDa, Protein from Synechocystis sp. PCC 6803)
- Beta,beta-caroten-4-one (550 Da, Ligand)
- Photosystem i reaction center subunit xi (16 kDa, Protein from Synechocystis sp. PCC 6803)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Photosystem ii protein d1 2 (38 kDa, Protein from Synechocystis sp. PCC 6803)
- Cytochrome b559 subunit beta (4 kDa, Protein from Synechocystis sp. PCC 6803)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Synechocystis sp. PCC 6803)
- (3'r)-3'-hydroxy-beta,beta-caroten-4-one (566 Da, Ligand)
- Beta,beta-carotene-4,4'-dione (564 Da, Ligand)
- Photosystem i reaction center subunit iii (18 kDa, Protein from Synechocystis sp. PCC 6803)
- Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from Synechocystis sp. PCC 6803)
- Photosystem i iron-sulfur center (8 kDa, Protein from Synechocystis sp. PCC 6803)
- Photosystem ii d2 protein (37 kDa, Protein from Synechocystis sp. PCC 6803)
- Pheophytin a (871 Da, Ligand)
- Iron/sulfur cluster (351 Da, Ligand)
- Beta-carotene (536 Da, Ligand)
- Chlorophyll a isomer (893 Da, Ligand)
- Fe (ii) ion (55 Da, Ligand)
Release date: Aug. 16, 2023
Resolution: 3.15 Å
EM Method: Single-particle
Fitted PDBs: 8asl
Q-score: 0.518
Resolution: 3.15 Å
EM Method: Single-particle
Fitted PDBs: 8asl
Q-score: 0.518
Zhao Z, Vercellino I, Knoppova J, Sobotka R, Murray JW, Nixon PJ, Sazanov LA, Komenda J
Nat Commun (2023) 14 pp. 4681-4681 [ Pubmed: 37542031 DOI: doi:10.1038/s41467-023-40388-6 ]
Sample:
- Photosystem i reaction center subunit viii (4 kDa, Protein from Synechocystis sp. PCC 6803)
- Photosystem ii reaction center protein i (4 kDa, Protein from Synechocystis sp. PCC 6803)
- (1r,2s)-4-{(1e,3e,5e,7e,9e,11e,13e,15e,17e)-18-[(4s)-4-hydroxy-2,6,6-trimethylcyclohex-1-en-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaen-1-yl}-2,5,5-trimethylcyclohex-3-en-1-ol (568 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
- Cytochrome b559 subunit alpha (9 kDa, Protein from Synechocystis sp. PCC 6803)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- Photosystem i reaction center subunit xii (3 kDa, Protein from Synechocystis sp. PCC 6803)
- Photosystem i reaction center subunit ii (15 kDa, Protein from Synechocystis sp. PCC 6803)
- Photosystem i reaction center subunit iv (8 kDa, Protein from Synechocystis sp. PCC 6803)
- Photosystem i reaction center subunit psak 1 (8 kDa, Protein from Synechocystis sp. PCC 6803)
- Photosystem ii assembly lipoprotein ycf48 (37 kDa, Protein from Synechocystis sp. PCC 6803)
- Phylloquinone (450 Da, Ligand)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a2 (81 kDa, Protein from Synechocystis sp. PCC 6803)
- Beta,beta-caroten-4-one (550 Da, Ligand)
- Photosystem i reaction center subunit xi (16 kDa, Protein from Synechocystis sp. PCC 6803)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Photosystem ii protein d1 2 (38 kDa, Protein from Synechocystis sp. PCC 6803)
- Rcii/psi complex class 2 (Complex from Synechocystis sp. PCC 6803)
- Cytochrome b559 subunit beta (4 kDa, Protein from Synechocystis sp. PCC 6803)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Synechocystis sp. PCC 6803)
- (3'r)-3'-hydroxy-beta,beta-caroten-4-one (566 Da, Ligand)
- Beta,beta-carotene-4,4'-dione (564 Da, Ligand)
- Photosystem i reaction center subunit iii (18 kDa, Protein from Synechocystis sp. PCC 6803)
- Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from Synechocystis sp. PCC 6803)
- Photosystem i iron-sulfur center (8 kDa, Protein from Synechocystis sp. PCC 6803)
- Photosystem ii d2 protein (37 kDa, Protein from Synechocystis sp. PCC 6803)
- Pheophytin a (871 Da, Ligand)
- Iron/sulfur cluster (351 Da, Ligand)
- Fe (ii) ion (55 Da, Ligand)
- Chlorophyll a isomer (893 Da, Ligand)
- Beta-carotene (536 Da, Ligand)
RCII/PSI complex, focused refinement of PSI
Release date: Aug. 16, 2023
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8asp
Q-score: 0.571
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8asp
Q-score: 0.571
Zhao Z, Vercellino I, Knoppova J, Sobotka R, Murray JW, Nixon PJ, Sazanov LA, Komenda J
Nat Commun (2023) 14 pp. 4681-4681 [ Pubmed: 37542031 DOI: doi:10.1038/s41467-023-40388-6 ]
Sample:
- Photosystem i reaction center subunit viii (4 kDa, Protein from Synechocystis sp. PCC 6803)
- Rcii/psi complex (Complex from Synechocystis sp. PCC 6803)
- (1r,2s)-4-{(1e,3e,5e,7e,9e,11e,13e,15e,17e)-18-[(4s)-4-hydroxy-2,6,6-trimethylcyclohex-1-en-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaen-1-yl}-2,5,5-trimethylcyclohex-3-en-1-ol (568 Da, Ligand)
- Photosystem i reaction center subunit psak 1 (8 kDa, Protein from Synechocystis sp. PCC 6803)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- Photosystem i reaction center subunit xii (3 kDa, Protein from Synechocystis sp. PCC 6803)
- Photosystem i reaction center subunit ii (15 kDa, Protein from Synechocystis sp. PCC 6803)
- Photosystem i reaction center subunit iv (8 kDa, Protein from Synechocystis sp. PCC 6803)
- Phylloquinone (450 Da, Ligand)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a2 (81 kDa, Protein from Synechocystis sp. PCC 6803)
- Beta,beta-caroten-4-one (550 Da, Ligand)
- Photosystem i reaction center subunit xi (16 kDa, Protein from Synechocystis sp. PCC 6803)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Synechocystis sp. PCC 6803)
- (3'r)-3'-hydroxy-beta,beta-caroten-4-one (566 Da, Ligand)
- Beta,beta-carotene-4,4'-dione (564 Da, Ligand)
- Photosystem i reaction center subunit iii (18 kDa, Protein from Synechocystis sp. PCC 6803)
- Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from Synechocystis sp. PCC 6803)
- Photosystem i iron-sulfur center (8 kDa, Protein from Synechocystis sp. PCC 6803)
- Iron/sulfur cluster (351 Da, Ligand)
- Chlorophyll a isomer (893 Da, Ligand)
- Beta-carotene (536 Da, Ligand)